blue_cwl.recipes

Construction of recipes for circuit building.

Functions

build_cell_composition_from_me_densities(...)	Create cell composition file from KG me densities.
build_connectome_distance_dependent_recipe(...)	Build recipe for connectome manipulator.
build_connectome_manipulator_recipe(...)	Build connectome manipulator recipe.
build_mtype_taxonomy(mtypes)	A temporary solution in creating a taxonomy for circuit-build.
write_functionalizer_json_recipe(...[, ...])	Build functionalizer json recipe.

blue_cwl.recipes.build_cell_composition_from_me_densities(region: str, me_type_densities: DataFrame) → dict[str, Any]

Create cell composition file from KG me densities.

blue_cwl.recipes.build_connectome_distance_dependent_recipe(config_path, configuration, output_dir, morph_ext)

Build recipe for connectome manipulator.

blue_cwl.recipes.build_connectome_manipulator_recipe(circuit_config_path: str, micro_matrices: dict[str, DataFrame], output_dir: str | PathLike[str]) → dict

Build connectome manipulator recipe.

blue_cwl.recipes.build_mtype_taxonomy(mtypes: list[str]) → DataFrame

A temporary solution in creating a taxonomy for circuit-build.

blue_cwl.recipes.write_functionalizer_json_recipe(synapse_config: dict, region_map: RegionMap, annotation: VoxelData, output_dir: Path, output_recipe_filename: str, populations: tuple[NodePopulation, NodePopulation] | None = None)

Build functionalizer json recipe.

Parameters:

• synapse_config – config for the recipe.

• region_map – voxcell.regionmap

• annotation – Brain regions annotation

• output_dir – output directory to output recipe dataframes

• output_recipe_filename – filename for the json recipe

• populations – a tuple of the source and target node populations.